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    Cutal cutA divalent cation tolerance homolog-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502617, updated on 4-Apr-2024

    Summary

    Official Symbol
    Cutalprovided by RGD
    Official Full Name
    cutA divalent cation tolerance homolog-likeprovided by RGD
    Primary source
    RGD:1564854
    See related
    Ensembl:ENSRNOG00000018832 AllianceGenome:RGD:1564854
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564854
    Summary
    Predicted to enable copper ion binding activity. Predicted to be involved in response to metal ion. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 65.3), Kidney (RPKM 30.4) and 2 other tissues See more
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    Genomic context

    See Cutal in Genome Data Viewer
    Location:
    3p11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (38551790..38571209)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (18154300..18174957)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (13936709..13955651)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 Neighboring gene beta-1,3-galactosyltransferase 9 Neighboring gene proteasome 26S subunit, non-ATPase 5 Neighboring gene PHD finger protein 19 Neighboring gene RNA, U6 small nuclear 1256 Neighboring gene TNF receptor-associated factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables copper ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in response to metal ion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC502617

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395619.2NP_001382548.1  uncharacterized protein LOC502617

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6JUD7, D3ZY56
      Related
      ENSRNOP00000025501.4, ENSRNOT00000025501.5
      Conserved Domains (1) summary
      pfam03091
      Location:55152
      CutA1; CutA1 divalent ion tolerance protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      38551790..38571209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284398.1XP_063140468.1  uncharacterized protein LOC502617 isoform X1

    2. XM_039105724.2XP_038961652.1  uncharacterized protein LOC502617 isoform X1

      Conserved Domains (1) summary
      pfam03091
      Location:23120
      CutA1; CutA1 divalent ion tolerance protein

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109341.1: Suppressed sequence

      Description
      NM_001109341.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.