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    Pilrb2l4 paired immunoglobin like type 2 receptor beta 2 like 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304349, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Pilrb2l4provided by RGD
    Official Full Name
    paired immunoglobin like type 2 receptor beta 2 like 4provided by RGD
    Primary source
    RGD:1559588
    See related
    Ensembl:ENSRNOG00000049331 AllianceGenome:RGD:1559588
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pilrb2l1; RGD1559588
    Summary
    Predicted to enable MHC class I protein binding activity. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Spleen (RPKM 95.8), Lung (RPKM 19.6) and 5 other tissues See more
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    Genomic context

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    See Pilrb2l4 in Genome Data Viewer
    Location:
    12q11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (22512512..22518410)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (17398844..17404810)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (19890546..19896468)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene STAG3 cohesin complex component Neighboring gene uncharacterized LOC134481272 Neighboring gene PVR related immunoglobulin domain containing Neighboring gene vomeronasal 2 receptor, 61 Neighboring gene igE-binding protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables MHC class I protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cell periphery IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    paired immunoglobulin-like type 2 receptor beta; paired immunoglobulin-like type 2 receptor beta-2
    Names
    paired immunoglobin like type 2 receptor beta 2 like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      22512512..22518410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271739.1 → XP_063127809.1  paired immunoglobulin-like type 2 receptor beta-2 isoform X6

    2. XM_063271737.1 → XP_063127807.1  paired immunoglobulin-like type 2 receptor beta isoform X3

      UniProtKB/TrEMBL
      F7FGP9

    3. XM_063271736.1 → XP_063127806.1  paired immunoglobulin-like type 2 receptor beta isoform X2

      UniProtKB/TrEMBL
      F7FGP9

    4. XM_039089986.2 → XP_038945914.2  paired immunoglobulin-like type 2 receptor beta-2 isoform X7

    5. XM_039089985.2 → XP_038945913.1  paired immunoglobulin-like type 2 receptor beta isoform X1

      UniProtKB/TrEMBL
      F7FGP9
      Related
      ENSRNOP00000061816.2
      Conserved Domains (2) summary
      cd00096
      Location:41 → 45
      Ig; Ig strand A [structural motif]
      cl11960
      Location:41 → 134
      Ig; Immunoglobulin domain

    6. XM_063271738.1 → XP_063127808.1  paired immunoglobulin-like type 2 receptor beta isoform X5

      UniProtKB/TrEMBL
      F7FGP9

    7. XM_006249038.5 → XP_006249100.1  paired immunoglobulin-like type 2 receptor beta isoform X4

      See identical proteins and their annotated locations for XP_006249100.1

      UniProtKB/TrEMBL
      F7FGP9, M0R9X6
      Related
      ENSRNOP00000066310.2
      Conserved Domains (1) summary
      cl11960
      Location:41 → 134
      Ig; Immunoglobulin domain

    RNA

    1. XR_005491861.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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