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    Tmem45a2 transmembrane protein 45A2 [ Mus musculus (house mouse) ]

    Gene ID: 69457, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Tmem45a2provided by MGI
    Official Full Name
    transmembrane protein 45A2provided by MGI
    Primary source
    MGI:MGI:1916707
    See related
    Ensembl:ENSMUSG00000046748 AllianceGenome:MGI:1916707
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310005G13Rik
    Summary
    Orthologous to human TMEM45A (transmembrane protein 45A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Tmem45a2 in Genome Data Viewer
    Location:
    16 C1.1; 16 34.22 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (56857330..56892486, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (57036967..57071346, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene leukemia NUP98 fusion partner 1 Neighboring gene STARR-seq mESC enhancer starr_41072 Neighboring gene STARR-seq mESC enhancer starr_41073 Neighboring gene STARR-seq mESC enhancer starr_41074 Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1927 Neighboring gene translocase of outer mitochondrial membrane 70A Neighboring gene nitrilase family, member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69457

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358101.1 → NP_001345030.1  uncharacterized protein LOC69457

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      CT009577
      Consensus CDS
      CCDS49875.1
      UniProtKB/TrEMBL
      B7ZWJ5
      Related
      ENSMUSP00000154589.2, ENSMUST00000227043.2
      Conserved Domains (1) summary
      pfam04819
      Location:136 → 254
      DUF716; Family of unknown function (DUF716)

    2. NM_183281.2 → NP_899104.2  uncharacterized protein LOC69457

      See identical proteins and their annotated locations for NP_899104.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK009173, AK036849, CN831346, CT009577
      Consensus CDS
      CCDS49875.1
      UniProtKB/TrEMBL
      B7ZWJ5
      Related
      ENSMUSP00000070137.7, ENSMUST00000067173.8
      Conserved Domains (1) summary
      pfam04819
      Location:136 → 254
      DUF716; Family of unknown function (DUF716)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      56857330..56892486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036160108.1 → XP_036016001.1  uncharacterized protein LOC69457 isoform X1

      UniProtKB/TrEMBL
      B7ZWJ5
      Conserved Domains (1) summary
      pfam04819
      Location:136 → 254
      DUF716; Family of unknown function (DUF716)
    Nucleotide Protein Strain
    Heading Accession and Version

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