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    Tmem52b transmembrane protein 52B [ Mus musculus (house mouse) ]

    Gene ID: 330428, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmem52bprovided by MGI
    Official Full Name
    transmembrane protein 52Bprovided by MGI
    Primary source
    MGI:MGI:2442838
    See related
    Ensembl:ENSMUSG00000030160 AllianceGenome:MGI:2442838
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D630042F21Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in metanephros. Orthologous to human TMEM52B (transmembrane protein 52B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward kidney adult (RPKM 35.6) See more
    Orthologs
    human all
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    Genomic context

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    See Tmem52b in Genome Data Viewer
    Location:
    6 F3; 6 63.37 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129489512..129496190)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129512549..129519227)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 45969 Neighboring gene C-type lectin domain family 7, member a Neighboring gene oxidized low density lipoprotein (lectin-like) receptor 1 Neighboring gene RIKEN cDNA 1700101I11 gene Neighboring gene STARR-positive B cell enhancer mm9_chr6:129481855-129482155 Neighboring gene GABA type A receptor associated protein like 1 Neighboring gene STARR-positive B cell enhancer ABC_E10411 Neighboring gene killer cell lectin-like receptor family E member 1 Neighboring gene STARR-positive B cell enhancer mm9_chr6:129531448-129531748

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 52B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081186.1 → NP_001074655.1  transmembrane protein 52B precursor

      See identical proteins and their annotated locations for NP_001074655.1

      Status: PROVISIONAL

      Source sequence(s)
      AC161602
      Consensus CDS
      CCDS39659.1
      UniProtKB/Swiss-Prot
      Q0VBF2
      Related
      ENSMUSP00000032263.6, ENSMUST00000032263.7
      Conserved Domains (1) summary
      pfam14979
      Location:37 → 163
      TMEM52; Transmembrane 52

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      129489512..129496190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506325.4 → XP_006506388.1  transmembrane protein 52B isoform X1

      Conserved Domains (1) summary
      pfam14979
      Location:23 → 153
      TMEM52; Transmembrane 52
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VBF2.2 GenPept UniProtKB/Swiss-Prot:Q0VBF2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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