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    Gm17750 predicted gene, 17750 [ Mus musculus (house mouse) ]

    Gene ID: 553095, updated on 21-May-2024

    Summary

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    Official Symbol
    Gm17750provided by MGI
    Official Full Name
    predicted gene, 17750provided by MGI
    Primary source
    MGI:MGI:5009828
    See related
    Ensembl:ENSMUSG00000098087 AllianceGenome:MGI:5009828
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 42.6), whole brain E14.5 (RPKM 33.0) and 5 other tissues See more
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    Genomic context

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    See Gm17750 in Genome Data Viewer
    Location:
    13 C3; 13 43.99 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (84173418..84212922, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (84025297..84064774, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene Gm17750-Gm4241 readthrough Neighboring gene predicted gene 4241 Neighboring gene predicted gene 8447 Neighboring gene STARR-seq mESC enhancer starr_35161 Neighboring gene VISTA enhancer mm1660 Neighboring gene STARR-positive B cell enhancer mm9_chr13:84325541-84325841 Neighboring gene predicted gene 8456 Neighboring gene RIKEN cDNA A230107N01 gene Neighboring gene STARR-positive B cell enhancer ABC_E7261

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype. Oliver PL, et al. Cereb Cortex, 2015 Oct. PMID 25209608, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131220.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT030135
      Related
      ENSMUST00000182477.3

    2. NR_188738.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT030135
      Related
      ENSMUST00000246463.1

    3. NR_188739.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT030135
      Related
      ENSMUST00000242139.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      84173418..84212922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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