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    Slc6a21 solute carrier family 6 member 21 [ Mus musculus (house mouse) ]

    Gene ID: 76713, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Slc6a21provided by MGI
    Official Full Name
    solute carrier family 6 member 21provided by MGI
    Primary source
    MGI:MGI:1923963
    See related
    Ensembl:ENSMUSG00000070568 AllianceGenome:MGI:1923963
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm19188; 1700039E15Rik
    Summary
    Predicted to be involved in sodium ion transmembrane transport. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A21P (solute carrier family 6 member 21, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 209.5) See more
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    Genomic context

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    See Slc6a21 in Genome Data Viewer
    Location:
    7 B3; 7 29.23 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44926755..44938420)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45277331..45288996)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E872 Neighboring gene STARR-seq mESC enhancer starr_18835 Neighboring gene CD37 antigen Neighboring gene solute carrier family 6, member 16 Neighboring gene predicted gene, 23585 Neighboring gene STARR-positive B cell enhancer ABC_E6543 Neighboring gene predicted gene, 39006 Neighboring gene transient receptor potential cation channel, subfamily M, member 4 Neighboring gene ribosomal protein L14, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sodium ion transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 6 (neurotransmitter transporter)-like
    Names
    solute carrier family 6 (neurotransmitter transporter), member 20B pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033176.2 → NP_001028348.2  solute carrier family 6 (neurotransmitter transporter)-like

      Status: VALIDATED

      Source sequence(s)
      AC150897
      Consensus CDS
      CCDS21238.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      44926755..44938420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312377.1 → XP_017167866.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X2

      UniProtKB/TrEMBL
      A0A1B0GSD2
      Related
      ENSMUSP00000147890.2, ENSMUST00000210861.2
      Conserved Domains (1) summary
      cd11502
      Location:48 → 621
      SLC6sbd_NTT5; Neurotransmitter transporter 5; solute-binding domain

    2. XM_011250910.1 → XP_011249212.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:48 → 601
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_017312376.1 → XP_017167865.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X1

      Conserved Domains (1) summary
      cl00456
      Location:48 → 622
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_017312379.1 → XP_017167868.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X5

      Conserved Domains (1) summary
      cl00456
      Location:48 → 596
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    5. XM_017312378.1 → XP_017167867.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X4

      Conserved Domains (1) summary
      cl00456
      Location:48 → 596
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    6. XM_017312380.2 → XP_017167869.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X7

      Conserved Domains (1) summary
      cl00456
      Location:48 → 349
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    7. XM_011250911.1 → XP_011249213.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X6

      Conserved Domains (1) summary
      cl00456
      Location:3 → 419
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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