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    Tcstv4 Tcstv family member 4 [ Mus musculus (house mouse) ]

    Gene ID: 625360, updated on 21-May-2024

    Summary

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    Official Symbol
    Tcstv4provided by MGI
    Official Full Name
    Tcstv family member 4provided by MGI
    Primary source
    MGI:MGI:4840510
    See related
    Ensembl:ENSMUSG00000094796 AllianceGenome:MGI:4840510
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in thymus adult (RPKM 1.5), spleen adult (RPKM 1.3) and 9 other tissues See more
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    Genomic context

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    See Tcstv4 in Genome Data Viewer
    Location:
    13 D2.3; 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (120761833..120770379)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (120300233..120308843)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52032 Neighboring gene predicted gene, 39470 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene 2 cell stage variable group member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    2-cell-stage, variable group, member 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037925.3 → NP_001033014.1  2-cell-stage, variable group, member 3-like

      See identical proteins and their annotated locations for NP_001033014.1

      Status: VALIDATED

      Source sequence(s)
      AC239678
      Consensus CDS
      CCDS56910.1
      UniProtKB/TrEMBL
      Q3V185
      Related
      ENSMUSP00000153422.2, ENSMUST00000225029.2
      Conserved Domains (1) summary
      pfam07270
      Location:7 → 154
      DUF1438; Protein of unknown function (DUF1438)

    2. NM_001424720.1 → NP_001411649.1  2-cell-stage, variable group, member 3-like

      Status: VALIDATED

      Source sequence(s)
      AC239678
      UniProtKB/TrEMBL
      Q3V185
      Related
      ENSMUSP00000111141.4, ENSMUST00000081558.8

    3. NM_001424721.1 → NP_001411650.1  2-cell-stage, variable group, member 3-like

      Status: VALIDATED

      Source sequence(s)
      AC239678
      UniProtKB/TrEMBL
      Q3V185

    4. NM_001424722.1 → NP_001411651.1  2-cell-stage, variable group, member 3-like

      Status: VALIDATED

      Source sequence(s)
      AC239678
      UniProtKB/TrEMBL
      Q3V185

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      120761833..120770379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315556.1 → XP_017171045.1  2-cell-stage, variable group, member 3-like isoform X1

      UniProtKB/TrEMBL
      Q3V185
      Conserved Domains (1) summary
      pfam07270
      Location:7 → 154
      DUF1438; Protein of unknown function (DUF1438)
    Nucleotide Protein Strain
    Heading Accession and Version

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