U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rtl8a retrotransposon Gag like 8A [ Mus musculus (house mouse) ]

    Gene ID: 66158, updated on 8-Feb-2024

    Summary

    Official Symbol
    Rtl8aprovided by MGI
    Official Full Name
    retrotransposon Gag like 8Aprovided by MGI
    Primary source
    MGI:MGI:1913408
    See related
    Ensembl:ENSMUSG00000067925 AllianceGenome:MGI:1913408
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cxx1a; Mart8b; Mar8.2A/B; 1110012O05Rik
    Summary
    Predicted to be active in nucleolus. Is expressed in metanephros; nervous system; and neural retina. Orthologous to several human genes including RTL8B (retrotransposon Gag like 8B). [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rtl8a in Genome Data Viewer
    Location:
    X A5; X 29.87 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52644455..52645730, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53642488..53643763, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene splicing factor 3a, subunit 3 pseudogene Neighboring gene centromere protein K pseudogene Neighboring gene retrotransposon Gag like 8B Neighboring gene 53064

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    mammalian retrotransposon derived 8b
    Names
    CAAX box 1 homolog A
    CAAX box 1A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024170.2NP_077132.1  mammalian retrotransposon derived 8b

      See identical proteins and their annotated locations for NP_077132.1

      Status: VALIDATED

      Source sequence(s)
      AL807398
      Consensus CDS
      CCDS30134.1
      UniProtKB/TrEMBL
      Q9D1F0
      Related
      ENSMUSP00000086158.4, ENSMUST00000088779.5
      Conserved Domains (1) summary
      pfam16297
      Location:26113
      DUF4939; Domain of unknown function (DUF4939)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52644455..52645730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)