U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tcstv2c two cell stage variable group member 2C [ Mus musculus (house mouse) ]

    Gene ID: 639910, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tcstv2cprovided by MGI
    Official Full Name
    two cell stage variable group member 2Cprovided by MGI
    Primary source
    MGI:MGI:5434123
    See related
    Ensembl:ENSMUSG00000096323 AllianceGenome:MGI:5434123
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm20767
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tcstv2c in Genome Data Viewer
    Location:
    13 D2.3; 13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (120601782..120616871)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (120140246..120155335)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 21378 Neighboring gene Uncharacterized LOC132475968 Neighboring gene predicted gene, 20769 Neighboring gene predicted gene, 52031 Neighboring gene predicted gene, 39477

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Zfp206 regulates ES cell gene expression and differentiation. Zhang W, et al. Nucleic Acids Res, 2006. PMID 16971461, Free PMC Article
    2. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    2-cell-stage, variable group, member 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039648.3 → NP_001034737.2  2-cell-stage, variable group, member 1-like

      See identical proteins and their annotated locations for NP_001034737.2

      Status: VALIDATED

      Source sequence(s)
      AK139926, BC147578
      Consensus CDS
      CCDS56908.1
      UniProtKB/TrEMBL
      O70517, Q3USZ4
      Related
      ENSMUSP00000152988.2, ENSMUST00000225683.2
      Conserved Domains (1) summary
      pfam07270
      Location:7 → 155
      DUF1438; Protein of unknown function (DUF1438)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      120601782..120616871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517734.2 → XP_006517797.1  2-cell-stage, variable group, member 1-like isoform X1

      See identical proteins and their annotated locations for XP_006517797.1

      UniProtKB/TrEMBL
      O70517, Q3USZ4
      Related
      ENSMUSP00000137504.2, ENSMUST00000179071.2
      Conserved Domains (1) summary
      pfam07270
      Location:7 → 155
      DUF1438; Protein of unknown function (DUF1438)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous