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    Pate9 prostate and testis expressed 9 [ Mus musculus (house mouse) ]

    Gene ID: 434396, updated on 8-Feb-2024

    Summary

    Official Symbol
    Pate9provided by MGI
    Official Full Name
    prostate and testis expressed 9provided by MGI
    Primary source
    MGI:MGI:3647347
    See related
    Ensembl:ENSMUSG00000074448 AllianceGenome:MGI:3647347
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm5615; Pate-H; EG434396
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Pate9 in Genome Data Viewer
    Location:
    9 A4; 9 20.65 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (36443699..36453259, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (36532403..36541963, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene prostate and testis expressed 12 Neighboring gene prostate and testis expressed 11 Neighboring gene STARR-seq mESC enhancer starr_23781 Neighboring gene STARR-seq mESC enhancer starr_23782 Neighboring gene prostate and testis expressed 8 Neighboring gene prostate and testis expressed 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    prostate and testis expressed H

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033783.2NP_001028955.1  prostate and testis expressed H precursor

      See identical proteins and their annotated locations for NP_001028955.1

      Status: VALIDATED

      Source sequence(s)
      AC159896
      Consensus CDS
      CCDS52766.1
      UniProtKB/TrEMBL
      Q3UW02
      Related
      ENSMUSP00000096499.2, ENSMUST00000098900.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      36443699..36453259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)