Catip ciliogenesis associated TTC17 interacting protein [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Catipprovided by MGI
Official Full Name: ciliogenesis associated TTC17 interacting proteinprovided by MGI
Primary source: MGI:MGI:2685062
See related: Ensembl:ENSMUSG00000073650 AllianceGenome:MGI:2685062
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm216
Summary: Predicted to be involved in actin filament polymerization and cilium organization. Predicted to act upstream of or within cell projection organization. Predicted to be located in several cellular components, including actin cytoskeleton; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CATIP (ciliogenesis associated TTC17 interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in testis adult (RPKM 7.0), lung adult (RPKM 3.0) and 11 other tissues See more
Orthologs: human all
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Genomic context

Location:: 1 C3; 1 38.54 cM

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	1	NC_000067.7 (74401272..74408482)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	1	NC_000067.6 (74362113..74369323)

Chromosome 1 - NC_000067.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in actin filament polymerization	IBA Inferred from Biological aspect of Ancestor more info
involved_in actin filament polymerization	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within cell projection organization	IEA Inferred from Electronic Annotation more info
involved_in cilium organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in cilium organization	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in actin cytoskeleton	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: ciliogenesis-associated TTC17-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001379457.1 → NP_001366386.1 ciliogenesis-associated TTC17-interacting protein

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the protein-coding transcript.

Source sequence(s)

AC098570

Consensus CDS

CCDS15046.1

UniProtKB/TrEMBL

A0A8V5KY96, F7AAT1

Related

ENSMUSP00000117442.3, ENSMUST00000128445.9

RNA

NR_166731.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AC098570

Related

ENSMUST00000097697.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000067.7 Reference GRCm39 C57BL/6J

Range

74401272..74408482

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_011238521.1 → XP_011236823.1 ciliogenesis-associated TTC17-interacting protein isoform X1

UniProtKB/TrEMBL

A0A8V5KY96
XM_017320632.1 → XP_017176121.1 ciliogenesis-associated TTC17-interacting protein isoform X2

UniProtKB/Swiss-Prot

B9EKE5, Q3UUR2

UniProtKB/TrEMBL

A0A8V5KY96

Related

ENSMUST00000191010.2

Conserved Domains (1) summary

cl02594
Location:303 → 342

DD_R_PKA_DPY30-like; dimerization/docking (D/D) domains found in the cAMP-dependent protein kinase regulatory subunit (PRKAR) and the DPY30/SDC1-like family
XM_011238522.2 → XP_011236824.1 ciliogenesis-associated TTC17-interacting protein isoform X3
XM_017320639.2 → XP_017176128.1 ciliogenesis-associated TTC17-interacting protein isoform X4