U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cyp2d13 cytochrome P450, family 2, subfamily d, polypeptide 13 [ Mus musculus (house mouse) ]

    Gene ID: 68444, updated on 27-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cyp2d13provided by MGI
    Official Full Name
    cytochrome P450, family 2, subfamily d, polypeptide 13provided by MGI
    Primary source
    MGI:MGI:88605
    See related
    Ensembl:ENSMUSG00000118516 AllianceGenome:MGI:88605
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1300007K12Rik
    Summary
    This gene is one of numerous cytochrome P450 genes that are present in several clusters throughout the genome, and it is a member of the family 2, subfamily d group of genes. This gene does not contain a functional open reading fame, and it is thus classified as a transcribed pseudogene. However, transcripts with a 1 nt deletion relative to the reference genome sequence have been found in some strains, and these would potentially encode a cytochrome P450 polypeptide. [provided by RefSeq, Apr 2024]
    Annotation information
    Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
    Expression
    Restricted expression toward liver adult (RPKM 173.2) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Cyp2d13 in Genome Data Viewer
    Location:
    15 E1; 15 38.67 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (82520951..82526246, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (82636750..82642045, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 2, subfamily d, polypeptide 34, pseudogene Neighboring gene cytochrome P450, family 2, subfamily d, polypeptide 34 Neighboring gene cytochrome P450, family 2, subfamily d, member 35, pseudogene Neighboring gene cytochrome P450, family 2, subfamily d, polypeptide 36, pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Nelson DR, et al. Pharmacogenetics, 2004 Jan. PMID 15128046
    2. Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. Kamileri I, et al. Proc Natl Acad Sci U S A, 2012 Feb 21. PMID 22323595, Free PMC Article
    3. The P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature. Nelson DR, et al. DNA Cell Biol, 1993 Jan-Feb. PMID 7678494
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome P450, family 2, subfamily d, polypeptide 13
    Names
    cytochrome P450, 2d13

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001429617.1 → NP_001416546.1  cytochrome P450, family 2, subfamily d, polypeptide 13

      Status: VALIDATED

      Source sequence(s)
      OW971705

    RNA

    1. NR_190749.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118710

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      82520951..82526246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_003552.1: Suppressed sequence

      Description
      NR_003552.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.