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    Smim41 small integral membrane protein 41 [ Mus musculus (house mouse) ]

    Gene ID: 77717, updated on 16-Mar-2024

    Summary

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    Official Symbol
    Smim41provided by MGI
    Official Full Name
    small integral membrane protein 41provided by MGI
    Primary source
    MGI:MGI:1924967
    See related
    Ensembl:ENSMUSG00000075408 AllianceGenome:MGI:1924967
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6030408B16Rik
    Summary
    Orthologous to human SMIM41 (small integral membrane protein 41). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 12.5), subcutaneous fat pad adult (RPKM 8.4) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Smim41 in Genome Data Viewer
    Location:
    15 F1; 15 56.68 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101191040..101195307)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101293163..101297426)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:101098208-101098391 Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene STARR-seq mESC enhancer starr_39794 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:101114283-101114579 Neighboring gene autophagy related 101 Neighboring gene predicted gene, 41403 Neighboring gene predicted gene, 52200 Neighboring gene keratin 80 Neighboring gene predicted gene, 35853 Neighboring gene microRNA 1941

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    small integral membrane protein 41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001369218.1 → NP_001356147.1  small integral membrane protein 41

      Status: VALIDATED

      Source sequence(s)
      AC163018
      Consensus CDS
      CCDS88850.1
      UniProtKB/TrEMBL
      Q3UYR0
      Related
      ENSMUSP00000153762.2, ENSMUST00000191426.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      101191040..101195307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030248816.2 → XP_030104676.1  small integral membrane protein 41 isoform X1

      UniProtKB/TrEMBL
      Q3UYR0

    2. XM_030248817.2 → XP_030104677.1  small integral membrane protein 41 isoform X1

      UniProtKB/TrEMBL
      Q3UYR0
    Nucleotide Protein Strain
    Heading Accession and Version

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