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    H3f5 H3.5 histone [ Mus musculus (house mouse) ]

    Gene ID: 667250, updated on 8-Feb-2024

    Summary

    Official Symbol
    H3f5provided by MGI
    Official Full Name
    H3.5 histoneprovided by MGI
    Primary source
    MGI:MGI:3651714
    See related
    AllianceGenome:MGI:3651714
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H3mm12; Gm12657
    Expression
    Biased expression in ovary adult (RPKM 34.3), duodenum adult (RPKM 7.5) and 1 other tissue See more
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    Genomic context

    See H3f5 in Genome Data Viewer
    Location:
    4 C5; 4 43.34 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (94481887..94488556)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (94593650..94600319)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12656 Neighboring gene STARR-seq mESC enhancer starr_10788 Neighboring gene caspase activity and apoptosis inhibitor 1 Neighboring gene phospholipase A2, activating protein Neighboring gene STARR-positive B cell enhancer ABC_E3497 Neighboring gene intraflagellar transport 74 Neighboring gene leucine rich repeat containing 19 Neighboring gene microRNA 872

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables nucleosomal DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of euchromatin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC667250

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081019.1NP_001074488.1  uncharacterized protein LOC667250

      See identical proteins and their annotated locations for NP_001074488.1

      Status: PREDICTED

      Source sequence(s)
      AL732597
      UniProtKB/TrEMBL
      A1L0V4
      Conserved Domains (2) summary
      PTZ00018
      Location:1136
      PTZ00018; histone H3; Provisional
      pfam00125
      Location:1132
      Histone; Core histone H2A/H2B/H3/H4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      94481887..94488556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)