U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    2210409E12Rik RIKEN cDNA 2210409E12 gene [ Mus musculus (house mouse) ]

    Gene ID: 72381, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    2210409E12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2210409E12 geneprovided by MGI
    Gene description
    transcription elongation factor B (SIII), polypeptide 2 pseudogene
    Primary source
    MGI:MGI:1919631
    See related
    Ensembl:ENSMUSG00000081766 AllianceGenome:MGI:1919631
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 2210409E12Rik in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88863464..88863840)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88972638..88973014)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase 1, opposite strand Neighboring gene STARR-seq mESC enhancer starr_30370 Neighboring gene serine carboxypeptidase 1 Neighboring gene STARR-seq mESC enhancer starr_30374 Neighboring gene STARR-positive B cell enhancer ABC_E3993 Neighboring gene STARR-seq mESC enhancer starr_30376 Neighboring gene STARR-seq mESC enhancer starr_30377 Neighboring gene STARR-positive B cell enhancer ABC_E10705 Neighboring gene elongin B-like Neighboring gene coilin Neighboring gene STARR-seq mESC enhancer starr_30379 Neighboring gene STARR-seq mESC enhancer starr_30380 Neighboring gene STARR-positive B cell enhancer ABC_E9837 Neighboring gene predicted gene 11496 Neighboring gene tripartite motif-containing 25

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • transcription elongation factor B (SIII), polypeptide 2 pseudogene

    Clone Names

    • MGC171078

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003492.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AL646096
      Related
      ENSMUST00000122062.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88863464..88863840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.