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    1700031L13Rik RIKEN cDNA 1700031L13 gene [ Mus musculus (house mouse) ]

    Gene ID: 67327, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1700031L13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700031L13 geneprovided by MGI
    Primary source
    MGI:MGI:1914577
    See related
    Ensembl:ENSMUSG00000099863 AllianceGenome:MGI:1914577
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 26.7) See more
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    Genomic context

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    See 1700031L13Rik in Genome Data Viewer
    Location:
    5 E1; 5 42.85 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (82270274..82272560, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (82122427..82124713, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 1 (chaperonin) pseudogene Neighboring gene adhesion G protein-coupled receptor L3 Neighboring gene STARR-seq mESC enhancer starr_13499 Neighboring gene STARR-positive B cell enhancer mm9_chr5:81649196-81649497 Neighboring gene STARR-seq mESC enhancer starr_13500 Neighboring gene STARR-seq mESC enhancer starr_13501 Neighboring gene STARR-seq mESC enhancer starr_13503 Neighboring gene STARR-seq mESC enhancer starr_13504 Neighboring gene predicted gene, 46946 Neighboring gene STARR-seq mESC enhancer starr_13508 Neighboring gene STARR-seq mESC enhancer starr_13509 Neighboring gene STARR-seq mESC enhancer starr_13510 Neighboring gene STARR-seq mESC enhancer starr_13513 Neighboring gene STARR-seq mESC enhancer starr_13514 Neighboring gene STARR-seq mESC enhancer starr_13515 Neighboring gene STARR-seq mESC enhancer starr_13516 Neighboring gene ribosomal protein L7, pseudogene 7 Neighboring gene STARR-seq mESC enhancer starr_13517 Neighboring gene STARR-seq mESC enhancer starr_13518 Neighboring gene STARR-seq mESC enhancer starr_13519 Neighboring gene microRNA 1187

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_138557.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC137979, AK006457, AK006583
      Related
      ENSMUST00000185410.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      82270274..82272560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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