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    Prr35 proline rich 35 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302999, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Prr35provided by RGD
    Official Full Name
    proline rich 35provided by RGD
    Primary source
    RGD:1598335
    See related
    Ensembl:ENSRNOG00000020212 AllianceGenome:RGD:1598335
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PRR35 (proline rich 35). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 26.9) and Brain (RPKM 7.3) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prr35 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (15466459..15472133, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (14961955..14966818, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (15308920..15314245, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 26 Neighboring gene Rab40c, member RAS oncogene family Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene uncharacterized LOC134480763 Neighboring gene ribosomal protein L36A, pseudogene 7 Neighboring gene calpain 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    proline-rich protein 35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398761.1 → NP_001385690.1  proline-rich protein 35

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HD79, D3ZMG2
      Conserved Domains (2) summary
      PHA03247
      Location:94 → 538
      PHA03247; large tegument protein UL36; Provisional
      pfam15269
      Location:17 → 70
      zf-C2H2_7; Zinc-finger

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      15466459..15472133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268936.1 → XP_063125006.1  proline-rich protein 35 isoform X1

      UniProtKB/TrEMBL
      A6HD79, D3ZMG2

    2. XM_039087119.2 → XP_038943047.1  proline-rich protein 35 isoform X1

      UniProtKB/TrEMBL
      A6HD79, D3ZMG2
      Related
      ENSRNOP00000027371.5
      Conserved Domains (2) summary
      PHA03247
      Location:94 → 538
      PHA03247; large tegument protein UL36; Provisional
      pfam15269
      Location:17 → 70
      zf-C2H2_7; Zinc-finger
    Nucleotide Protein Strain
    Heading Accession and Version

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