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    Prrg3 proline rich and Gla domain 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293935, updated on 6-Jun-2024

    Summary

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    Symbol
    Prrg3provided by RGD
    Full Name
    proline rich and Gla domain 3provided by RGD
    Primary source
    RGD:1560309
    See related
    Ensembl:ENSRNOG00000066176 AllianceGenome:RGD:1560309
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560309
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PRRG3 (proline rich and Gla domain 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 111.7), Brain (RPKM 29.5) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prrg3 in Genome Data Viewer
    Location:
    Xq37
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (154711246..154731359)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (149666498..149689353)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (69954910..69966733, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA-binding family member 3 like 1 Neighboring gene PAS domain containing repressor 1 Neighboring gene tubulin, alpha 1B, pseudogene 11 Neighboring gene cyclic nucleotide gated channel subunit alpha 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane gamma-carboxyglutamic acid protein 3
    Names
    proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
    transmembrane gamma-carboxyglutamic acid protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427169.2 → NP_001414098.1  transmembrane gamma-carboxyglutamic acid protein 3

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A6KUL3, M0R4Y6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      154711246..154731359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279841.1 → XP_063135911.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X2

    2. XM_017600377.3 → XP_017455866.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KUL3, M0R4Y6
      Conserved Domains (1) summary
      pfam00594
      Location:24 → 63
      Gla; Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain

    3. XM_017600378.3 → XP_017455867.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KUL3, M0R4Y6
      Conserved Domains (1) summary
      pfam00594
      Location:24 → 63
      Gla; Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain

    4. XM_006253297.4 → XP_006253359.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006253359.1

      UniProtKB/TrEMBL
      A6KUL3, M0R4Y6
      Conserved Domains (1) summary
      pfam00594
      Location:24 → 63
      Gla; Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain

    5. XM_008771339.3 → XP_008769561.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X1

      See identical proteins and their annotated locations for XP_008769561.1

      UniProtKB/TrEMBL
      A6KUL3, M0R4Y6
      Conserved Domains (1) summary
      pfam00594
      Location:24 → 63
      Gla; Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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