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    RGD1311745 similar to RIKEN cDNA 1110059G10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301079, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RGD1311745provided by RGD
    Official Full Name
    similar to RIKEN cDNA 1110059G10provided by RGD
    Primary source
    RGD:1311745
    See related
    Ensembl:ENSRNOG00000004135 AllianceGenome:RGD:1311745
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human KIAA1143 (KIAA1143). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 117.1), Thymus (RPKM 94.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RGD1311745 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (131475903..131486619, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (122598363..122609127, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (132029618..132032971, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1, pseudogene 36 Neighboring gene ribosomal protein L7, pseudogene 3 Neighboring gene kinesin family member 15 Neighboring gene transmembrane protein 42 Neighboring gene transglutaminase 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94788

    General protein information

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    Preferred Names
    uncharacterized protein KIAA1143 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008329.1 → NP_001008330.1  uncharacterized protein KIAA1143 homolog

      See identical proteins and their annotated locations for NP_001008330.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085913
      UniProtKB/Swiss-Prot
      Q5RKH3
      UniProtKB/TrEMBL
      A6I494
      Related
      ENSRNOP00000005502.4, ENSRNOT00000005502.7
      Conserved Domains (1) summary
      pfam15377
      Location:5 → 151
      DUF4604; Domain of unknown function (DUF4604)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      131475903..131486619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081310.2 → XP_038937238.1  uncharacterized protein KIAA1143 homolog isoform X2

      UniProtKB/TrEMBL
      A0A0G2K0E2
      Related
      ENSRNOP00000071409.1
      Conserved Domains (1) summary
      pfam15377
      Location:32 → 139
      DUF4604; Domain of unknown function (DUF4604)

    2. XM_063265310.1 → XP_063121380.1  uncharacterized protein KIAA1143 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q233

    3. XM_063265311.1 → XP_063121381.1  uncharacterized protein KIAA1143 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q233

    4. XM_063265309.1 → XP_063121379.1  uncharacterized protein KIAA1143 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q233
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5RKH3.1 GenPept UniProtKB/Swiss-Prot:Q5RKH3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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