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    Tmem198b transmembrane protein 198b [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500762, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Tmem198bprovided by RGD
    Official Full Name
    transmembrane protein 198bprovided by RGD
    Primary source
    RGD:1562342
    See related
    Ensembl:ENSRNOG00000006827 AllianceGenome:RGD:1562342
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562342
    Summary
    Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and vesicle membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 22.7), Heart (RPKM 18.6) and 9 other tissues See more
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    Genomic context

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    See Tmem198b in Genome Data Viewer
    Location:
    7q11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (1814208..1819421, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (1229709..1234920, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (3224831..3230129, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene PYM homolog 1, exon junction complex associated factor Neighboring gene matrix metallopeptidase 19 Neighboring gene DnaJ heat shock protein family (Hsp40) member C14 Neighboring gene ORMDL sphingolipid biosynthesis regulator 2 Neighboring gene SAP domain containing ribonucleoprotein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC500762

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109281.2 → NP_001102751.1  uncharacterized protein LOC500762

      See identical proteins and their annotated locations for NP_001102751.1

      Status: PREDICTED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Related
      ENSRNOP00000008929.2, ENSRNOT00000008929.4
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      1814208..1819421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079730.2 → XP_038935658.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)

    2. XM_039079731.2 → XP_038935659.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)

    3. XM_039079728.1 → XP_038935656.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)

    4. XM_063264093.1 → XP_063120163.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6

    5. XM_039079729.1 → XP_038935657.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)

    6. XM_017595041.3 → XP_017450530.1  uncharacterized protein LOC500762 isoform X1

      UniProtKB/TrEMBL
      A6KSI8, D3ZAM6
      Conserved Domains (1) summary
      pfam13886
      Location:43 → 240
      DUF4203; Domain of unknown function (DUF4203)
    Nucleotide Protein Strain
    Heading Accession and Version

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