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    1810055G02Rik RIKEN cDNA 1810055G02 gene [ Mus musculus (house mouse) ]

    Gene ID: 72056, updated on 30-Apr-2024

    Summary

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    Official Symbol
    1810055G02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1810055G02 geneprovided by MGI
    Primary source
    MGI:MGI:1919306
    See related
    Ensembl:ENSMUSG00000035372 AllianceGenome:MGI:1919306
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in nucleoplasm. Predicted to be active in Golgi apparatus. Is expressed in several structures, including central nervous system; cranium; ganglia; jaw; and submandibular gland primordium. Orthologous to human C11orf24 (chromosome 11 open reading frame 24). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis adult (RPKM 90.7), small intestine adult (RPKM 75.0) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1810055G02Rik in Genome Data Viewer
    Location:
    19 A; 19 3.44 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (3758343..3767882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (3708293..3717882)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 5 Neighboring gene VISTA enhancer mm1719 Neighboring gene predicted gene, 36672 Neighboring gene predicted gene, 36608 Neighboring gene STARR-positive B cell enhancer ABC_E5671 Neighboring gene predicted gene, 36787 Neighboring gene STARR-seq mESC enhancer starr_45327 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45328 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:3767926-3768113 Neighboring gene STARR-positive B cell enhancer ABC_E5672 Neighboring gene lysine methyltransferase 5B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    2. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    3. Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins JR, et al. Science, 2010 Apr 30. PMID 20360068, Free PMC Article
    4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C11orf24 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358256.2 → NP_001345185.1  uncharacterized protein C11orf24 homolog precursor

      Status: VALIDATED

      Source sequence(s)
      AC132452
      Consensus CDS
      CCDS50342.1
      UniProtKB/Swiss-Prot
      Q8VCP2, Q9D8N1
      Related
      ENSMUSP00000158133.2, ENSMUST00000237955.2
      Conserved Domains (1) summary
      cl26464
      Location:104 → 329
      Atrophin-1; Atrophin-1 family

    2. NM_001358257.2 → NP_001345186.1  uncharacterized protein C11orf24 homolog precursor

      Status: VALIDATED

      Source sequence(s)
      AC132452
      Consensus CDS
      CCDS50342.1
      UniProtKB/Swiss-Prot
      Q8VCP2, Q9D8N1
      Related
      ENSMUSP00000158554.2, ENSMUST00000235837.2
      Conserved Domains (1) summary
      cl26464
      Location:104 → 329
      Atrophin-1; Atrophin-1 family

    3. NM_001358258.2 → NP_001345187.1  uncharacterized protein C11orf24 homolog precursor

      Status: VALIDATED

      Source sequence(s)
      AC132452
      Consensus CDS
      CCDS50342.1
      UniProtKB/Swiss-Prot
      Q8VCP2, Q9D8N1
      Related
      ENSMUSP00000157453.2, ENSMUST00000235295.2
      Conserved Domains (1) summary
      cl26464
      Location:104 → 329
      Atrophin-1; Atrophin-1 family

    4. NM_028077.4 → NP_082353.1  uncharacterized protein C11orf24 homolog precursor

      See identical proteins and their annotated locations for NP_082353.1

      Status: VALIDATED

      Source sequence(s)
      AC132452
      Consensus CDS
      CCDS50342.1
      UniProtKB/Swiss-Prot
      Q8VCP2, Q9D8N1
      Related
      ENSMUSP00000047063.2, ENSMUST00000039048.2
      Conserved Domains (1) summary
      cl26464
      Location:104 → 329
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      3758343..3767882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D8N1.1 GenPept UniProtKB/Swiss-Prot:Q9D8N1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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