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    Samd13 sterile alpha motif domain containing 13 [ Mus musculus (house mouse) ]

    Gene ID: 75015, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Samd13provided by MGI
    Official Full Name
    sterile alpha motif domain containing 13provided by MGI
    Primary source
    MGI:MGI:2686498
    See related
    Ensembl:ENSMUSG00000048652 Ensembl:ENSMUSG00000090202 AllianceGenome:MGI:2686498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1652; 1700013A07Rik; 1700095G21Rik; 4930483N21Rik
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 13.7) See more
    Orthologs
    human all
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    Genomic context

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    See Samd13 in Genome Data Viewer
    Location:
    3 H2; 3 72.28 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (146350944..146391555, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (146645189..146685892, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11229 Neighboring gene ribosome production factor 1 homolog Neighboring gene deoxyribonuclease II beta Neighboring gene STARR-seq mESC enhancer starr_09227 Neighboring gene urate oxidase Neighboring gene STARR-seq mESC enhancer starr_09228 Neighboring gene predicted gene 16325 Neighboring gene predicted gene, 40169 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146349571-146349754 Neighboring gene predicted gene, 36521 Neighboring gene high mobility group box 1 pseudogene Neighboring gene protein kinase, cAMP dependent, catalytic, beta Neighboring gene STARR-seq mESC enhancer starr_09230 Neighboring gene STARR-positive B cell enhancer ABC_E4605 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146444299-146444452 Neighboring gene capping protein (actin filament) muscle Z-line, alpha 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Evidence Implicating CCNB1IP1, a RING Domain-Containing Protein Required for Meiotic Crossing Over in Mice, as an E3 SUMO Ligase. Strong ER, et al. Genes (Basel), 2010 Dec 2. PMID 21779533, Free PMC Article
    2. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
    3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    sterile alpha motif domain-containing protein 13; DnaJ domain-containing protein
    Names
    SAM domain-containing protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368725.1 → NP_001355654.1  sterile alpha motif domain-containing protein 13 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS89700.1
      UniProtKB/Swiss-Prot
      D3YUG0
      Related
      ENSMUSP00000118934.2, ENSMUST00000147113.2
      Conserved Domains (1) summary
      cd09583
      Location:28 → 96
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    2. NM_001368726.1 → NP_001355655.1  sterile alpha motif domain-containing protein 13 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS89699.1
      UniProtKB/TrEMBL
      A0A0G2JGB1
      Related
      ENSMUSP00000143496.2, ENSMUST00000197989.2
      Conserved Domains (1) summary
      cd09583
      Location:9 → 77
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    3. NM_029144.5 → NP_083420.2  DnaJ domain-containing protein isoform 3

      See identical proteins and their annotated locations for NP_083420.2

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS38667.1
      UniProtKB/TrEMBL
      Q80ZP0, Q9D5A2
      Related
      ENSMUSP00000051453.6, ENSMUST00000049703.6
      Conserved Domains (2) summary
      COG0484
      Location:2 → 67
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:3 → 66
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      146350944..146391555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252862.2 → XP_030108722.1  sterile alpha motif domain-containing protein 13 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JGB1
      Conserved Domains (1) summary
      cd09583
      Location:9 → 77
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    2. XM_030252861.2 → XP_030108721.1  sterile alpha motif domain-containing protein 13 isoform X2

      UniProtKB/Swiss-Prot
      D3YUG0
      Related
      ENSMUSP00000119608.2, ENSMUST00000125965.8
      Conserved Domains (1) summary
      cd09583
      Location:28 → 96
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    3. XM_011240263.3 → XP_011238565.1  sterile alpha motif domain-containing protein 13 isoform X2

      See identical proteins and their annotated locations for XP_011238565.1

      UniProtKB/Swiss-Prot
      D3YUG0
      Conserved Domains (1) summary
      cd09583
      Location:28 → 96
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    4. XM_011240264.2 → XP_011238566.1  sterile alpha motif domain-containing protein 13 isoform X2

      See identical proteins and their annotated locations for XP_011238566.1

      UniProtKB/Swiss-Prot
      D3YUG0
      Conserved Domains (1) summary
      cd09583
      Location:28 → 96
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

    5. XM_006502225.5 → XP_006502288.1  DnaJ domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_006502288.1

      UniProtKB/TrEMBL
      G5E8V6, Q9D5A2
      Related
      ENSMUSP00000114745.2, ENSMUST00000149825.2
      Conserved Domains (1) summary
      pfam00226
      Location:3 → 66
      DnaJ; DnaJ domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3YUG0.1 GenPept UniProtKB/Swiss-Prot:D3YUG0

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