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    Spata31f3 spermatogenesis associated 31 subfamily F member 3 [ Mus musculus (house mouse) ]

    Gene ID: 277773, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Spata31f3provided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily F member 3provided by MGI
    Primary source
    MGI:MGI:2679716
    See related
    Ensembl:ENSMUSG00000050141 AllianceGenome:MGI:2679716
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam205c; FAM205CP; 4931430D02
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM205C (family with sequence similarity 205 member C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 84.8) See more
    Orthologs
    human all
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    Genomic context

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    See Spata31f3 in Genome Data Viewer
    Location:
    4 A5; 4 22.88 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42867999..42874234, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42868003..42874246, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930578G10 gene Neighboring gene predicted gene 9615 Neighboring gene spermatogenesis associated 31 subfamily F member 1A Neighboring gene STARR-seq mESC enhancer starr_10042 Neighboring gene PHD finger protein 24 Neighboring gene predicted gene, 52697 Neighboring gene STARR-positive B cell enhancer ABC_E660 Neighboring gene DnaJ heat shock protein family (Hsp40) member B5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Homology

    Clone Names

    • MGC58387

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein SPATA31F3
    Names
    family with sequence similarity 205, member C
    protein FAM205C
    protein FAM205CP homolog
    transmembrane protein ENSP00000340100 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356379.2 → NP_001343308.1  protein SPATA31F3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL772334
      Consensus CDS
      CCDS89730.1
      UniProtKB/Swiss-Prot
      Q80YD3, Q8C5W8
      Related
      ENSMUSP00000103612.2, ENSMUST00000107978.2
      Conserved Domains (1) summary
      pfam15371
      Location:52 → 123
      DUF4599; Domain of unknown function (DUF4599)

    2. NM_001356380.2 → NP_001343309.1  protein SPATA31F3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772334
      UniProtKB/TrEMBL
      Q3V0J3

    3. NM_001425861.1 → NP_001412790.1  protein SPATA31F3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL772334

    4. NM_001425862.1 → NP_001412791.1  protein SPATA31F3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL772334

    5. NM_001425863.1 → NP_001412792.1  protein SPATA31F3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772334
      UniProtKB/TrEMBL
      Q3V0J3

    6. NM_177785.6 → NP_808453.1  protein SPATA31F3 isoform 1

      See identical proteins and their annotated locations for NP_808453.1

      Status: VALIDATED

      Source sequence(s)
      AL772334
      Consensus CDS
      CCDS18082.1
      UniProtKB/Swiss-Prot
      Q80YD3
      Related
      ENSMUSP00000060318.5, ENSMUST00000055944.11
      Conserved Domains (1) summary
      pfam15371
      Location:55 → 123
      DUF4599; Domain of unknown function (DUF4599)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      42867999..42874234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q80YD3.1 GenPept UniProtKB/Swiss-Prot:Q80YD3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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