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    Ccdc15 coiled-coil domain containing 15 [ Mus musculus (house mouse) ]

    Gene ID: 245902, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Ccdc15provided by MGI
    Official Full Name
    coiled-coil domain containing 15provided by MGI
    Primary source
    MGI:MGI:2444488
    See related
    Ensembl:ENSMUSG00000034303 AllianceGenome:MGI:2444488
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D030074L19; A630039F14Rik
    Summary
    Predicted to be active in centrosome. Orthologous to human CCDC15 (coiled-coil domain containing 15). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc15 in Genome Data Viewer
    Location:
    9 A4; 9 20.74 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (37178758..37262508, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (37267462..37350218, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E249 Neighboring gene STARR-seq mESC enhancer starr_23796 Neighboring gene transmembrane protein 218 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:37038155-37038413 Neighboring gene solute carrier family 37 (glycerol-3-phosphate transporter), member 2 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 34885 Neighboring gene STARR-seq mESC enhancer starr_23800 Neighboring gene STARR-positive B cell enhancer ABC_E6724 Neighboring gene hepatocyte cell adhesion molecule Neighboring gene STARR-seq mESC enhancer starr_23802 Neighboring gene STARR-seq mESC enhancer starr_23805 Neighboring gene roundabout guidance receptor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    2. Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant. Quinlan MA, et al. Front Mol Neurosci, 2020. PMID 32581705, Free PMC Article
    3. Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins JR, et al. Science, 2010 Apr 30. PMID 20360068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 15

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081429.2 → NP_001074898.2  coiled-coil domain-containing protein 15

      Status: VALIDATED

      Source sequence(s)
      AC138284
      Consensus CDS
      CCDS40584.2
      UniProtKB/Swiss-Prot
      Q8BQB1, Q8BRD7, Q8C9M2, Q8CBK5
      Related
      ENSMUSP00000159312.2, ENSMUST00000239439.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      37178758..37262508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510341.5 → XP_006510404.1  coiled-coil domain-containing protein 15 isoform X6

      See identical proteins and their annotated locations for XP_006510404.1

      UniProtKB/Swiss-Prot
      Q8BQB1, Q8BRD7, Q8C9M2, Q8CBK5
      Related
      ENSMUSP00000150207.2, ENSMUST00000213633.2

    2. XM_006510338.5 → XP_006510401.1  coiled-coil domain-containing protein 15 isoform X2

      See identical proteins and their annotated locations for XP_006510401.1

    3. XM_036155017.1 → XP_036010910.1  coiled-coil domain-containing protein 15 isoform X11

    4. XM_006510343.5 → XP_006510406.1  coiled-coil domain-containing protein 15 isoform X10

    5. XM_036155016.1 → XP_036010909.1  coiled-coil domain-containing protein 15 isoform X8

    6. XM_017313387.3 → XP_017168876.1  coiled-coil domain-containing protein 15 isoform X4

    7. XM_006510340.5 → XP_006510403.1  coiled-coil domain-containing protein 15 isoform X5

    8. XM_030244389.2 → XP_030100249.1  coiled-coil domain-containing protein 15 isoform X7

    9. XM_006510339.5 → XP_006510402.1  coiled-coil domain-containing protein 15 isoform X3

    10. XM_006510337.5 → XP_006510400.1  coiled-coil domain-containing protein 15 isoform X1

    11. XM_030244390.2 → XP_030100250.1  coiled-coil domain-containing protein 15 isoform X11

    12. XM_011242532.4 → XP_011240834.1  coiled-coil domain-containing protein 15 isoform X2

      See identical proteins and their annotated locations for XP_011240834.1

    13. XM_006510342.5 → XP_006510405.1  coiled-coil domain-containing protein 15 isoform X9

    RNA

    1. XR_379118.5 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C9M2.2 GenPept UniProtKB/Swiss-Prot:Q8C9M2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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