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    Hoxd3os1 homeobox D3, opposite strand 1 [ Mus musculus (house mouse) ]

    Gene ID: 73429, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Hoxd3os1provided by MGI
    Official Full Name
    homeobox D3, opposite strand 1provided by MGI
    Primary source
    MGI:MGI:1923875
    See related
    AllianceGenome:MGI:1923875
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700064D17Rik; 1700109F18Rik
    Summary
    Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 52.6) See more
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    Genomic context

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    See Hoxd3os1 in Genome Data Viewer
    Location:
    2 C3; 2 44.13 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (74540388..74546474, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (74710044..74716130, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene homeobox D9 Neighboring gene predicted gene, 38462 Neighboring gene homeobox D8 Neighboring gene homeobox D3 Neighboring gene homeobox D4 Neighboring gene STARR-seq mESC enhancer starr_04856 Neighboring gene microRNA 10b Neighboring gene Hoxd antisense growth associated long non-coding RNA Neighboring gene predicted gene 14424

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Detection of genes regulated by Lmx1b during limb dorsalization. Feenstra JM, et al. Dev Growth Differ, 2012 May. PMID 22417325, Free PMC Article
    2. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027899.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL928644

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      74540388..74546474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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