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    Ucn3 urocortin 3 [ Mus musculus (house mouse) ]

    Gene ID: 83428, updated on 27-May-2024

    Summary

    Official Symbol
    Ucn3provided by MGI
    Official Full Name
    urocortin 3provided by MGI
    Primary source
    MGI:MGI:1932970
    See related
    Ensembl:ENSMUSG00000044988 AllianceGenome:MGI:1932970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ucn III
    Summary
    This gene encodes a member of the corticotropin-releasing hormone peptide family that participates in coordinating autonomic, endocrine, and behavioral responses to stress. The encoded preproprotein undergoes proteolytic processing to generate a mature, functional hormone. The pancreatic islets isolated from mice lacking the encoded protein secrete less insulin in response to high glucose concentrations. Transgenic mice overexpressing the encoded protein exhibit a metabolically favorable phenotype resisting obesity and hyperglycemia on a high-fat diet. [provided by RefSeq, Sep 2016]
    Expression
    Biased expression in duodenum adult (RPKM 1.4), small intestine adult (RPKM 0.5) and 2 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ucn3 in Genome Data Viewer
    Location:
    13 A1; 13 2.2 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (3990688..3995349, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (3940688..3945349, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9391 Neighboring gene neuroepithelial cell transforming gene 1 Neighboring gene STARR-positive B cell enhancer ABC_E7198 Neighboring gene tubulin, alpha-like 3 Neighboring gene aldo-keto reductase family 1, member C13 pseudogene Neighboring gene STARR-seq mESC enhancer starr_33495 Neighboring gene aldo-keto reductase family 1, member C14 Neighboring gene STARR-seq mESC enhancer starr_33496 Neighboring gene STARR-seq mESC enhancer starr_33497

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (4)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables corticotropin-releasing hormone receptor 2 binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables corticotropin-releasing hormone receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables corticotropin-releasing hormone receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables neuropeptide hormone activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in axon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon terminus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in varicosity ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    urocortin-3
    Names
    Urocortin III

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_031250.5NP_112540.2  urocortin-3 preproprotein

      See identical proteins and their annotated locations for NP_112540.2

      Status: REVIEWED

      Source sequence(s)
      AC139323, AK148451
      Consensus CDS
      CCDS26217.1
      UniProtKB/Swiss-Prot
      Q924A4
      UniProtKB/TrEMBL
      Q0VDY5, Q3UFJ9
      Related
      ENSMUSP00000049678.8, ENSMUST00000058610.8
      Conserved Domains (1) summary
      pfam00473
      Location:123160
      CRF; Corticotropin-releasing factor family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      3990688..3995349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)