U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AI593442 expressed sequence AI593442 [ Mus musculus (house mouse) ]

    Gene ID: 330941, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AI593442provided by MGI
    Official Full Name
    expressed sequence AI593442provided by MGI
    Primary source
    MGI:MGI:2143099
    See related
    Ensembl:ENSMUSG00000078307 AllianceGenome:MGI:2143099
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E130102D23
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in ear; nervous system; and urinary system. Orthologous to human C11orf87 (chromosome 11 open reading frame 87). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cortex adult (RPKM 20.0), frontal lobe adult (RPKM 11.1) and 5 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AI593442 in Genome Data Viewer
    Location:
    9 A5.3; 9 29.12 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (52584332..52593434, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (52673032..52682134, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33125 Neighboring gene predicted gene, 33210 Neighboring gene STARR-seq mESC enhancer starr_24137 Neighboring gene STARR-seq mESC enhancer starr_24138 Neighboring gene predicted gene 1715 Neighboring gene STARR-seq mESC enhancer starr_24139 Neighboring gene predicted gene, 53523 Neighboring gene predicted gene, 39339

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Li MZ, et al. Dev Biol, 2006 Apr 15. PMID 16516881
    2. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC130101

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C11orf87 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001286641.1 → NP_001273570.1  uncharacterized protein C11orf87 homolog precursor

      See identical proteins and their annotated locations for NP_001273570.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK033979, AK053489, BC109328, CJ105950, CT010440
      Consensus CDS
      CCDS52795.1
      UniProtKB/Swiss-Prot
      Q32M26, Q8CC42
      Related
      ENSMUSP00000149532.2, ENSMUST00000213937.2

    2. NM_178906.5 → NP_849237.2  uncharacterized protein C11orf87 homolog precursor

      See identical proteins and their annotated locations for NP_849237.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK033979, AK053489, BC109328, CT010440
      Consensus CDS
      CCDS52795.1
      UniProtKB/Swiss-Prot
      Q32M26, Q8CC42
      Related
      ENSMUSP00000096365.3, ENSMUST00000098768.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      52584332..52593434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510458.4 → XP_006510521.1  uncharacterized protein C11orf87 homolog isoform X1

      See identical proteins and their annotated locations for XP_006510521.1

      UniProtKB/Swiss-Prot
      Q32M26, Q8CC42

    2. XM_030244429.2 → XP_030100289.1  uncharacterized protein C11orf87 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q32M26, Q8CC42

    3. XM_011242565.4 → XP_011240867.1  uncharacterized protein C11orf87 homolog isoform X1

      See identical proteins and their annotated locations for XP_011240867.1

      UniProtKB/Swiss-Prot
      Q32M26, Q8CC42

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177907.2: Suppressed sequence

      Description
      NM_177907.2: This RefSeq was permanently suppressed because it is primarily UTR sequence.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32M26.1 GenPept UniProtKB/Swiss-Prot:Q32M26

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous