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    Snord3a small nucleolar RNA, C/D box 3A [ Mus musculus (house mouse) ]

    Gene ID: 19850, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Snord3aprovided by MGI
    Official Full Name
    small nucleolar RNA, C/D box 3Aprovided by MGI
    Primary source
    MGI:MGI:97977
    See related
    Ensembl:ENSMUSG00000106147 AllianceGenome:MGI:97977
    Gene type
    snRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rnu3a
    Summary
    Acts upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Snord3a in Genome Data Viewer
    Location:
    10 B1; 10 21.81 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (40134464..40134675)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (40258468..40258679)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:39952398-39952599 Neighboring gene ribosome production factor 2 homolog Neighboring gene STARR-positive B cell enhancer ABC_E10600 Neighboring gene STARR-seq mESC enhancer starr_26413 Neighboring gene general transcription factor IIIC, polypeptide 6, alpha Neighboring gene S-adenosylmethionine decarboxylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2319 Neighboring gene STARR-seq mESC enhancer starr_26414 Neighboring gene predicted gene 8948

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Presence of a differentially expressed U3A RNA variant in mouse. Structure and evolutive implications. Mazan S, et al. FEBS Lett, 1990 Jul 2. PMID 2365077
    2. Structure of the differentially expressed mouse U3A gene. Mazan S, et al. Eur J Biochem, 1992 May 1. PMID 1576989
    3. In humans all U3 genes map to chromosome 17p12-->p11, but in mouse the U3A and U3B genes are located on different chromosomes. Mazan S, et al. Cytogenet Cell Genet, 1993. PMID 8440138
    4. Small nucleolar RNAs. Eliceiri GL. Cell Mol Life Sci, 1999 Oct 1. PMID 11213258, Free PMC Article
    5. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Other Names

    • U3A small nuclear RNA

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002842.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC131684
      Related
      ENSMUST00000196710.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      40134464..40134675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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