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    Ccdc9b coiled-coil domain containing 9B [ Mus musculus (house mouse) ]

    Gene ID: 214239, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Ccdc9bprovided by MGI
    Official Full Name
    coiled-coil domain containing 9Bprovided by MGI
    Primary source
    MGI:MGI:2685199
    See related
    Ensembl:ENSMUSG00000045838 AllianceGenome:MGI:2685199
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm353; A430105I19Rik
    Summary
    Is expressed in heart. Orthologous to human CCDC9B (coiled-coil domain containing 9B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in lung adult (RPKM 9.6), bladder adult (RPKM 6.8) and 22 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc9b in Genome Data Viewer
    Location:
    2 E5; 2 59.45 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118584626..118593421, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118754145..118762947, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene phospholipase C, beta 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118554101-118554254 Neighboring gene STARR-positive B cell enhancer ABC_E7850 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118556392-118556593 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118571143-118571444 Neighboring gene InaF motif containing 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118588340-118588523 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118590344-118590645 Neighboring gene predicted gene, 54146 Neighboring gene proline/histidine/glycine-rich 1 Neighboring gene dispatched RND transporter family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global expression profile of highly enriched cardiomyocytes derived from human embryonic stem cells. Xu XQ, et al. Stem Cells, 2009 Sep. PMID 19658189
    2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 9B
    Names
    uncharacterized protein C15orf52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001982.3 → NP_001001982.3  coiled-coil domain-containing protein 9B

      Status: VALIDATED

      Source sequence(s)
      AL772255
      Consensus CDS
      CCDS50670.1
      UniProtKB/Swiss-Prot
      A3KGF9, Q3UV54, Q6DI90
      UniProtKB/TrEMBL
      A0A8Q0K7A4
      Related
      ENSMUSP00000051853.10, ENSMUST00000059997.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      118584626..118593421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499105.5 → XP_006499168.1  coiled-coil domain-containing protein 9B isoform X1

      UniProtKB/Swiss-Prot
      A3KGF9, Q3UV54, Q6DI90
      Conserved Domains (1) summary
      pfam15266
      Location:129 → 303
      DUF4594; Domain of unknown function (DUF4594)

    2. XM_011239421.4 → XP_011237723.1  coiled-coil domain-containing protein 9B isoform X2

      Conserved Domains (1) summary
      pfam15266
      Location:186 → 285
      DUF4594; Domain of unknown function (DUF4594)

    RNA

    1. XR_374437.5 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3KGF9.1 GenPept UniProtKB/Swiss-Prot:A3KGF9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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