U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Abhd11-as1 ABHD11 antisense RNA 1 (tail to tail) [ Rattus norvegicus (Norway rat) ]

    Gene ID: 686120, updated on 5-Mar-2024

    Summary

    Official Symbol
    Abhd11-as1provided by RGD
    Official Full Name
    ABHD11 antisense RNA 1 (tail to tail)provided by RGD
    Primary source
    RGD:1585479
    See related
    AllianceGenome:RGD:1585479
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Wbscr26; Abhd11os
    Summary
    Orthologous to human ABHD11-AS1 (ABHD11 antisense RNA 1 (tail to tail)). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 183.7), Brain (RPKM 11.3) and 3 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Abhd11-as1 in Genome Data Viewer
    Location:
    12q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (27317656..27318643)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (21681118..21682106)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (24721190..24722177)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene BUD23, rRNA methyltransferase and ribosome maturation factor Neighboring gene small Cajal body-specific RNA 20 Neighboring gene syntaxin 1A Neighboring gene abhydrolase domain containing 11 Neighboring gene claudin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Other Names

    • Williams Beuren syndrome chromosome region 26
    • abhydrolase domain containing 11, opposite strand

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026689.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AI059630, CB705680

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      27317656..27318643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)