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    Adh6-ps1 alcohol dehydrogenase 6 (class V), pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 639769, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Adh6-ps1provided by MGI
    Official Full Name
    alcohol dehydrogenase 6 (class V), pseudogene 1provided by MGI
    Primary source
    MGI:MGI:1918999
    See related
    Ensembl:ENSMUSG00000121473 AllianceGenome:MGI:1918999
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Adh5ps; Gm7277; 1300002P07Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Adh6-ps1 in Genome Data Viewer
    Location:
    3 G3; 3 64.22 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (138079882..138094052)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (138374121..138388291)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase 6A (class V) Neighboring gene predicted gene, 23467 Neighboring gene alcohol dehydrogenase 6B (class V) Neighboring gene STARR-seq mESC enhancer starr_09107 Neighboring gene alcohol dehydrogenase 4 (class II), pi polypeptide Neighboring gene STARR-seq mESC enhancer starr_09108 Neighboring gene STARR-positive B cell enhancer ABC_E6139 Neighboring gene alcohol dehydrogenase 5 (class III), chi polypeptide

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tissue expression pattern of class II and class V genes found in the Adh complex on mouse chromosome 3. Szalai G, et al. Biochem Genet, 2008 Dec. PMID 18802746
    2. Organization of six functional mouse alcohol dehydrogenase genes on two overlapping bacterial artificial chromosomes. Szalai G, et al. Eur J Biochem, 2002 Jan. PMID 11784316
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079845, AK004863, BY705068
      Related
      ENSMUST00000171054.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      138079882..138094052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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