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    4930579F01Rik RIKEN cDNA 4930579F01 gene [ Mus musculus (house mouse) ]

    Gene ID: 67741, updated on 30-Apr-2024

    Summary

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    Official Symbol
    4930579F01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930579F01 geneprovided by MGI
    Primary source
    MGI:MGI:1914991
    See related
    Ensembl:ENSMUSG00000012042 AllianceGenome:MGI:1914991
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C4orf17 (chromosome 4 open reading frame 17). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 21.2) See more
    Orthologs
    human all
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    Genomic context

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    See 4930579F01Rik in Genome Data Viewer
    Location:
    3 G3; 3 64.1 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (137869839..137899592, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (138164078..138193831, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene microsomal triglyceride transfer protein Neighboring gene STARR-positive B cell enhancer mm9_chr3:137778444-137778744 Neighboring gene STARR-seq mESC enhancer starr_09106 Neighboring gene STARR-positive B cell enhancer ABC_E3473 Neighboring gene tRNA methyltransferase 10A Neighboring gene STARR-positive B cell enhancer mm9_chr3:137861123-137861424 Neighboring gene RIKEN cDNA 0610031O16 gene Neighboring gene alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide Neighboring gene predicted gene, 40156

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C4orf17 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163385.2 → NP_001156857.1  uncharacterized protein C4orf17 homolog isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes longer isoform (1).
      Source sequence(s)
      AC131122
      Consensus CDS
      CCDS51081.1
      UniProtKB/TrEMBL
      B2RWT4, E9Q3L6
      Related
      ENSMUSP00000012186.5, ENSMUST00000012186.9
      Conserved Domains (1) summary
      pfam15256
      Location:22 → 200
      SPATIAL; SPATIAL

    2. NM_001163386.2 → NP_001156858.1  uncharacterized protein C4orf17 homolog isoform 2

      See identical proteins and their annotated locations for NP_001156858.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate first splice donor site and the predicted protein (isoform 2) initiates from an internal AUG compared to variant 1. Variants 2 and 3 both encode the same isoform (2).
      Source sequence(s)
      AC131122
      Consensus CDS
      CCDS80031.1
      UniProtKB/TrEMBL
      A0A0G2JEX5
      Related
      ENSMUSP00000142940.2, ENSMUST00000199293.2
      Conserved Domains (1) summary
      pfam15256
      Location:2 → 75
      SPATIAL

    3. NM_001374685.1 → NP_001361614.1  uncharacterized protein C4orf17 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3), as well as variant 2, encodes isoform 2.
      Source sequence(s)
      AC131122, AC163628
      UniProtKB/TrEMBL
      A0A0G2JEX5
      Conserved Domains (1) summary
      pfam15256
      Location:2 → 75
      SPATIAL

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      137869839..137899592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501946.3 → XP_006502009.1  uncharacterized protein C4orf17 homolog isoform X1

      See identical proteins and their annotated locations for XP_006502009.1

      UniProtKB/TrEMBL
      A0A0G2JEX5
      Conserved Domains (1) summary
      pfam15256
      Location:2 → 75
      SPATIAL
    Nucleotide Protein Strain
    Heading Accession and Version

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