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    AT2G21630 Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816701, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G21630
    Gene description
    Sec23/Sec24 protein transport family protein
    Primary source
    Araport:AT2G21630
    Locus tag
    AT2G21630
    See related
    TAIR:AT2G21630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G1.10; F2G1_10
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    Genomic context

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    See AT2G21630 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (9250298..9253915)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene endoplasmatic reticulum retrieval protein 1B Neighboring gene pectinesterase 11 Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene marker for oxidative stress response protein Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127734.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sec23/Sec24 protein transport family protein
    NP_179757.1
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1585 Blast hits to 1570 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 525; Fungi - 514; Plants - 334; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9250298..9253915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127734.3 → NP_179757.1  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179757.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SIJ7
      UniProtKB/TrEMBL
      A0A178VR60, A0A5S9WZZ4, A0A654F5N9
      Conserved Domains (1) summary
      PLN00162
      Location:2 → 761
      PLN00162; transport protein sec23; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIJ7.1

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