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    Cfap97 cilia and flagella associated protein 97 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306469, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Cfap97provided by RGD
    Official Full Name
    cilia and flagella associated protein 97provided by RGD
    Primary source
    RGD:1307325
    See related
    Ensembl:ENSRNOG00000032192 AllianceGenome:RGD:1307325
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307325
    Summary
    Orthologous to human CFAP97 (cilia and flagella associated protein 97). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 114.6), Kidney (RPKM 32.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap97 in Genome Data Viewer
    Location:
    16q11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (52818693..52867775, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (46086104..46135194, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (49280076..49329029, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482507 Neighboring gene solute carrier family 25 member 4 Neighboring gene sorting nexin 25 Neighboring gene U6 spliceosomal RNA Neighboring gene Lrp2 binding protein Neighboring gene ankyrin repeat domain 37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    cilia- and flagella-associated protein 97

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014001.1 → NP_001014023.1  cilia- and flagella-associated protein 97

      See identical proteins and their annotated locations for NP_001014023.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082052
      UniProtKB/Swiss-Prot
      Q66H34
      UniProtKB/TrEMBL
      A6JPP3
      Related
      ENSRNOP00000042262.3, ENSRNOT00000045721.5
      Conserved Domains (1) summary
      pfam13879
      Location:355 → 457
      KIAA1430; KIAA1430 homolog

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      52818693..52867775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008771264.4 → XP_008769486.1  cilia- and flagella-associated protein 97 isoform X4

      See identical proteins and their annotated locations for XP_008769486.1

      UniProtKB/Swiss-Prot
      Q66H34
      UniProtKB/TrEMBL
      A6JPP3
      Conserved Domains (1) summary
      pfam13879
      Location:355 → 457
      KIAA1430; KIAA1430 homolog

    2. XM_063275426.1 → XP_063131496.1  cilia- and flagella-associated protein 97 isoform X2

      UniProtKB/TrEMBL
      A6JPP3

    3. XM_063275425.1 → XP_063131495.1  cilia- and flagella-associated protein 97 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A3G7

    4. XM_063275427.1 → XP_063131497.1  cilia- and flagella-associated protein 97 isoform X3

      UniProtKB/TrEMBL
      A6JPP3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H34.1 GenPept UniProtKB/Swiss-Prot:Q66H34

    Gene LinkOut

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