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    AT3G23190 HR-like lesion-inducing protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821897, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G23190
    Gene description
    HR-like lesion-inducing protein-like protein
    Primary source
    Araport:AT3G23190
    Locus tag
    AT3G23190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G23190 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (8279271..8280912)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene HR-like lesion-inducing protein-like protein Neighboring gene HR-like lesion-inducing protein-like protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113220.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HR-like lesion-inducing protein-like protein
    NP_188960.1
    • HR-like lesion-inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT3G23180.1); Has 132 Blast hits to 132 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8279271..8280912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113220.4 → NP_188960.1  HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188960.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLD2, A0A384LC89, A0A5S9XEZ8, Q9LTC9
      Conserved Domains (1) summary
      pfam05514
      Location:18 → 122
      HR_lesion; HR-like lesion-inducing
    Nucleotide Protein
    Heading Accession and Version

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