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    Vom2r31 vomeronasal 2 receptor, 31 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286985, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Vom2r31provided by RGD
    Official Full Name
    vomeronasal 2 receptor, 31provided by RGD
    Primary source
    RGD:708412
    See related
    Ensembl:ENSRNOG00000068273 AllianceGenome:RGD:708412
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 1.9) See more
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    Genomic context

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    See Vom2r31 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (80255245..80283462)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (71183055..71211273)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (74975364..75001212)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 4B, pseudogene 2 Neighboring gene uncharacterized LOC134485099 Neighboring gene vomeronasal 2 receptor, pseudogene 55 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 58 Neighboring gene vomeronasal 2, receptor 116 like, pseudogene 14 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 50

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution. Herrada G, et al. Cell, 1997 Aug 22. PMID 9288755
    2. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal 2 receptor, 31
    Names
    putative pheromone receptor (Go-VN7)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173319.2 → NP_775441.2  vomeronasal 2 receptor, 31 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      Q9QWK0
      Related
      ENSRNOP00000051358.4, ENSRNOT00000047147.5
      Conserved Domains (3) summary
      cd15283
      Location:547 → 782
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:508 → 547
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cl10011
      Location:43 → 498
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      80255245..80283462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102751.2 → XP_038958679.1  vomeronasal 2 receptor, 31 isoform X1

      UniProtKB/TrEMBL
      E9PT57
      Conserved Domains (3) summary
      cd15283
      Location:598 → 849
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:525 → 578
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cl10011
      Location:60 → 515
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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