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    Cebpzos CCAAT/enhancer binding protein zeta, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 68554, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Cebpzosprovided by MGI
    Official Full Name
    CCAAT/enhancer binding protein zeta, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1915804
    See related
    Ensembl:ENSMUSG00000062691 AllianceGenome:MGI:1915804
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110001A16Rik
    Summary
    Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human CEBPZOS (CEBPZ opposite strand). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 5.9), CNS E14 (RPKM 5.0) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cebpzos in Genome Data Viewer
    Location:
    17 E3; 17 49.64 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (79223928..79228477)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (78916499..78921048)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene predicted gene, 26637 Neighboring gene sulfotransferase family, cytosolic, 6B, member 1 Neighboring gene STARR-seq mESC enhancer starr_43273 Neighboring gene STARR-positive B cell enhancer ABC_E8698 Neighboring gene CCAAT/enhancer binding protein zeta Neighboring gene STARR-positive B cell enhancer ABC_E5629 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 7 Neighboring gene protein kinase D3 Neighboring gene predicted gene, 41622

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein CEBPZOS
    Names
    CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177402.1 → NP_001170873.1  protein CEBPZOS

      See identical proteins and their annotated locations for NP_001170873.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses a different splice site in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC154274, AK003199, BY102137
      Consensus CDS
      CCDS50183.1
      UniProtKB/Swiss-Prot
      Q8BTE5
      Related
      ENSMUSP00000136411.2, ENSMUST00000180077.8

    2. NM_001177403.1 → NP_001170874.1  protein CEBPZOS

      See identical proteins and their annotated locations for NP_001170874.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC154274, AV491230
      Consensus CDS
      CCDS50183.1
      UniProtKB/Swiss-Prot
      Q8BTE5
      Related
      ENSMUSP00000068772.5, ENSMUST00000063817.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      79223928..79228477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524847.4 → XP_006524910.1  protein CEBPZOS isoform X1

      See identical proteins and their annotated locations for XP_006524910.1

      UniProtKB/Swiss-Prot
      Q8BTE5
      Related
      ENSMUSP00000141923.3, ENSMUST00000192288.3

    2. XM_030250018.2 → XP_030105878.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      Q8BTE5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BTE5.2 GenPept UniProtKB/Swiss-Prot:Q8BTE5

    Gene LinkOut

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