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    Armh2 armadillo-like helical domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 666145, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Armh2provided by MGI
    Official Full Name
    armadillo-like helical domain containing 2provided by MGI
    Primary source
    MGI:MGI:1916676
    See related
    Ensembl:ENSMUSG00000085861 AllianceGenome:MGI:1916676
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700016G14Rik
    Summary
    Orthologous to human ARMH2 (armadillo like helical domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 20.8) See more
    Orthologs
    human all
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    Genomic context

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    See Armh2 in Genome Data Viewer
    Location:
    13 A3.1; 13 10.63 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (24918006..24930577)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (24734023..24746594)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5385 Neighboring gene STARR-positive B cell enhancer ABC_E3076 Neighboring gene predicted gene, 22013 Neighboring gene STARR-positive B cell enhancer ABC_E8518 Neighboring gene STARR-seq mESC enhancer starr_33983 Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene STARR-positive B cell enhancer ABC_E10785 Neighboring gene STARR-positive B cell enhancer mm9_chr13:24705319-24705620 Neighboring gene X-linked lymphocyte-regulated 5 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7216 Neighboring gene STARR-seq mESC enhancer starr_33986 Neighboring gene STARR-positive B cell enhancer ABC_E8519 Neighboring gene geminin Neighboring gene STARR-seq mESC enhancer starr_33987 Neighboring gene cDNA sequence BC005537 Neighboring gene predicted gene, 22358

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Armadillo-like helical domain containing-4 is dynamically expressed in both the first and second heart fields. Conway SJ, et al. Gene Expr Patterns, 2019 Dec. PMID 31655130, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    armadillo-like helical domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370932.1 → NP_001357861.1  armadillo-like helical domain-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      AL589699
      Consensus CDS
      CCDS88427.1
      UniProtKB/TrEMBL
      A0A286YCZ6
      Related
      ENSMUSP00000153199.2, ENSMUST00000136906.2
      Conserved Domains (1) summary
      pfam17822
      Location:15 → 237
      DUF5584; Family of unknown function (DUF5584)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      24918006..24930577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011244363.2 → XP_011242665.1  armadillo-like helical domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_011242665.1

      UniProtKB/TrEMBL
      A0A286YCZ6
      Conserved Domains (1) summary
      pfam17822
      Location:15 → 237
      DUF5584; Family of unknown function (DUF5584)
    Nucleotide Protein Strain
    Heading Accession and Version

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