Tmco2 transmembrane and coiled-coil domains 2 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tmco2provided by MGI
Official Full Name: transmembrane and coiled-coil domains 2provided by MGI
Primary source: MGI:MGI:1916719
See related: Ensembl:ENSMUSG00000078577 AllianceGenome:MGI:1916719
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 1700028F16Rik
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO2 (transmembrane and coiled-coil domains 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward testis adult (RPKM 175.1) See more
Orthologs: human all
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Genomic context

Location:: 4 D2.2; 4 56.8 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	4	NC_000070.7 (120962848..120966414, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	4	NC_000070.6 (121105651..121109217, complement)

Chromosome 4 - NC_000070.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)
Targeted (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane and coiled-coil domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081312.2 → NP_001074781.1 transmembrane and coiled-coil domain-containing protein 2

See identical proteins and their annotated locations for NP_001074781.1

Status: VALIDATED

Source sequence(s)

AL669949

Consensus CDS

CCDS38866.1

UniProtKB/Swiss-Prot

P0C1V4

UniProtKB/TrEMBL

J3JS82

Related

ENSMUSP00000101875.4, ENSMUST00000106268.4

Conserved Domains (1) summary

pfam15844
Location:11 → 182

TMCCDC2; Transmembrane and coiled-coil domain-containing protein 2