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    AT5G54095 proteoglycan-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835496, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G54095
    Gene description
    proteoglycan-like protein
    Primary source
    Araport:AT5G54095
    Locus tag
    AT5G54095
    See related
    TAIR:AT5G54095
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT5G54095 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (21952647..21953507, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor A9 Neighboring gene ncRNA Neighboring gene homogentisate 1,2-dioxygenase Neighboring gene DNA mismatch repair protein MutS, type 2 Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345078.1
    NM_124789.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proteoglycan-like protein
    NP_568803.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21952647..21953507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124789.4 → NP_568803.1  proteoglycan-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q681J0, Q8LCD2

    2. NM_001345078.1 → NP_001331038.1  proteoglycan-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCM6, Q8LCD2
    Nucleotide Protein
    Heading Accession and Version

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