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    GAUT6 galacturonosyltransferase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837189, updated on 15-Feb-2024

    Summary

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    Gene symbol
    GAUT6
    Gene description
    galacturonosyltransferase 6
    Primary source
    Araport:AT1G06780
    Locus tag
    AT1G06780
    See related
    TAIR:AT1G06780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4H5.13; F4H5_13; galacturonosyltransferase 6
    Summary
    Encodes a protein with putative galacturonosyltransferase activity.
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    Genomic context

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    See GAUT6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (2083311..2087141)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene ncRNA Neighboring gene DREB2A-interacting protein 1 Neighboring gene RNA polymerase Rpb7 N-terminal domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pectin Synthesis and Pollen Tube Growth in Arabidopsis Involves Three GAUT1 Golgi-Anchoring Proteins: GAUT5, GAUT6, and GAUT7. Lund CH, et al. Front Plant Sci, 2020. PMID 33072156, Free PMC Article
    2. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Sterling JD, et al. Proc Natl Acad Sci U S A, 2006 Mar 28. PMID 16540543, Free PMC Article
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100555.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pectin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galacturonosyltransferase 6
    NP_001184925.1
    • galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1).
    NP_563771.1
    • galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1); Has 1389 Blast hits to 1379 proteins in 238 species: Archae - 0; Bacteria - 400; Metazoa - 143; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2083311..2087141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197996.1 → NP_001184925.1  galacturonosyltransferase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184925.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W945, A0A5S9T0H9, F4IDS0
      Conserved Domains (2) summary
      cd06429
      Location:314 → 588
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
      PLN02718
      Location:1 → 602
      PLN02718; Probable galacturonosyltransferase

    2. NM_100555.3 → NP_563771.1  galacturonosyltransferase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563771.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9Y5
      UniProtKB/TrEMBL
      A0A178W945, A0A5S9T0H9, W8PW41
      Conserved Domains (2) summary
      cd06429
      Location:301 → 575
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
      PLN02718
      Location:1 → 589
      PLN02718; Probable galacturonosyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9Y5.1

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