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    CNGC7 cyclic nucleotide gated channel 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838169, updated on 7-Sep-2023

    Summary

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    Gene symbol
    CNGC7
    Gene description
    cyclic nucleotide gated channel 7
    Primary source
    Araport:AT1G15990
    Locus tag
    AT1G15990
    See related
    TAIR:AT1G15990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC7; cyclic nucleotide gated channel 7; T24D18.9; T24D18_9
    Summary
    Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
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    Genomic context

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    See CNGC7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5491133..5494192, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6 Neighboring gene DNA glycosylase superfamily protein Neighboring gene NDH-dependent cyclic electron flow 1 Neighboring gene GAG1At protein Neighboring gene magnesium transporter 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility. Tunc-Ozdemir M, et al. PLoS One, 2013. PMID 23424627, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CNGC7 and 8 are at least partially redundant and provide an essential function at the initiation of pollen tube tip growth
      Title: Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001332197.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic nucleotide gated channel 7
    NP_001319014.1
    • cyclic nucleotide gated channel 7 (CNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 8 (TAIR:AT1G19780.1); Has 3586 Blast hits to 3408 proteins in 277 species: Archae - 0; Bacteria - 66; Metazoa - 1555; Fungi - 86; Plants - 1001; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5491133..5494192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332197.1 → NP_001319014.1  cyclic nucleotide gated channel 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2R9, Q9S9N5
      UniProtKB/TrEMBL
      A0A5S9UMG7
      Conserved Domains (2) summary
      PLN03192
      Location:149 → 573
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:502 → 633
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S9N5.1

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