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    AT2G38820 DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818464, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G38820
    Gene description
    DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506)
    Primary source
    Araport:AT2G38820
    Locus tag
    AT2G38820
    See related
    TAIR:AT2G38820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13I13.5; F13I13_5
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    Genomic context

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    See AT2G38820 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16221815..16223746)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Plant calmodulin-binding protein-like protein Neighboring gene histone H2A 8 Neighboring gene uncharacterized protein Neighboring gene Ubiquitin-conjugating enzyme/RWD-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336739.1
    NM_201907.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506)
    NP_001318378.1
    • Protein of unknown function (DUF506); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 400 Blast hits to 398 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_973636.1
    • Protein of unknown function (DUF506); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16221815..16223746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201907.2 → NP_973636.1  DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973636.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VML5, A0A5S9X575, F4ITY1
      Conserved Domains (1) summary
      pfam04720
      Location:75 → 282
      PDDEXK_6; PDDEXK-like family of unknown function

    2. NM_001336739.1 → NP_001318378.1  DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ITY2
    Nucleotide Protein
    Heading Accession and Version

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