AT3G63510 FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT3G63510
Gene description: FMN-linked oxidoreductases superfamily protein
Primary source: Araport:AT3G63510
Locus tag: AT3G63510
See related: TAIR:AT3G63510
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G63510 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 12

Sequence:: Chromosome: 3; NC_003074.8 (23450536..23452794)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

Orthologs from OrthoDB

NM_001084866.1

Supported by ESTs:

NM_116216.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables flavin adenine dinucleotide binding	IEA Inferred from Electronic Annotation more info
enables tRNA dihydrouridine synthase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in tRNA dihydrouridine synthesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: FMN-linked oxidoreductases superfamily protein

NP_001078335.1

FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).

NP_567149.2

FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

23450536..23452794

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116216.2 → NP_567149.2 FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567149.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VCW4, A0A5S9XND0, Q8H128

Conserved Domains (2) summary

COG0042
Location:45 → 378

DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

PRK11815
Location:43 → 379

PRK11815; tRNA-dihydrouridine synthase A; Provisional
NM_001084866.1 → NP_001078335.1 FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078335.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VCW4, A0A5S9XND0, A8MRX7

Conserved Domains (2) summary

COG0042
Location:21 → 345

DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

cl21457
Location:31 → 346

TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...