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    Lhca6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838498, updated on 15-Oct-2023

    Summary

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    Gene symbol
    Lhca6
    Gene description
    PSI type II chlorophyll a/b-binding protein (Lhca2*1)
    Primary source
    Araport:AT1G19150
    Locus tag
    AT1G19150
    See related
    TAIR:AT1G19150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LHCA2*1; photosystem I light harvesting complex gene 6; PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN; T29M8.2; T29M8_2
    Summary
    PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA
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    Genomic context

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    See Lhca6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6612630..6613972)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RmlC-like jelly roll fold protein Neighboring gene ncRNA Neighboring gene ubiquinone biosynthesis COQ9-like protein Neighboring gene F-box family protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stromal Loop of Lhca6 is Responsible for the Linker Function Required for the NDH-PSI Supercomplex Formation. Otani T, et al. Plant Cell Physiol, 2017 Apr 1. PMID 28184910
    2. Efficient operation of NAD(P)H dehydrogenase requires supercomplex formation with photosystem I via minor LHCI in Arabidopsis. Peng L, et al. Plant Cell, 2009 Nov. PMID 19903870, Free PMC Article
    3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101773.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PSI type II chlorophyll a/b-binding protein (Lhca2*1)
    NP_173349.1
    • photosystem I light harvesting complex gene 6 (LHCA6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2345 Blast hits to 2241 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1989; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6612630..6613972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101773.3 → NP_173349.1  PSI type II chlorophyll a/b-binding protein (Lhca2*1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173349.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43382, Q84WT1, Q8LCQ4, Q9LMB1
      UniProtKB/TrEMBL
      A0A178WEZ5, A0A5S9V4V4, A0A654EG66
      Conserved Domains (1) summary
      PLN00098
      Location:1 → 270
      PLN00098; light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LCQ4.1

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