AT1G28610 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT1G28610
Gene description: GDSL-like Lipase/Acylhydrolase superfamily protein
Primary source: Araport:AT1G28610
Locus tag: AT1G28610
See related: TAIR:AT1G28610
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F1K23.16; F1K23_16
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Genomic context

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See AT1G28610 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Sequence:: Chromosome: 1; NC_003070.9 (10053443..10055881, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_102629.2

Supported by ESTs:

NM_202203.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: GDSL-like Lipase/Acylhydrolase superfamily protein

NP_564313.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, carboxylesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28600.2); Has 2710 Blast hits to 2687 proteins in 65 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 2689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NP_973932.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

10053443..10055881 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_202203.2 → NP_973932.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973932.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q94JT8, Q9SHP6

UniProtKB/TrEMBL

A0A178W9X9, A0A5S9W7Q9

Conserved Domains (1) summary

cd01837
Location:31 → 360

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
NM_102629.2 → NP_564313.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564313.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SHP6

Conserved Domains (1) summary

cl01053
Location:31 → 204

SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...