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    2310061I04Rik RIKEN cDNA 2310061I04 gene [ Mus musculus (house mouse) ]

    Gene ID: 69662, updated on 30-Apr-2024

    Summary

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    Official Symbol
    2310061I04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310061I04 geneprovided by MGI
    Primary source
    MGI:MGI:1916912
    See related
    Ensembl:ENSMUSG00000050705 AllianceGenome:MGI:1916912
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Located in mitochondrion. Is expressed in several structures, including adrenal gland; gonad; liver; lung; and spleen. Orthologous to human C6orf136 (chromosome 6 open reading frame 136). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in duodenum adult (RPKM 59.0), testis adult (RPKM 36.9) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2310061I04Rik in Genome Data Viewer
    Location:
    17 B1; 17 18.75 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36203569..36208270, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35892677..35897378, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42480 Neighboring gene protein phosphatase 1, regulatory subunit 18 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:36016615-36016802 Neighboring gene DEAH-box helicase 16 Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E10949 Neighboring gene predicted gene 16279 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene STARR-seq mESC enhancer starr_42481

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global gene expression analysis in fetal mouse ovaries with and without meiosis and comparison of selected genes with meiosis in the testis. Olesen C, et al. Cell Tissue Res, 2007 Apr. PMID 17431699
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC117734

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein C6orf136 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033630.1 → NP_001028802.1  uncharacterized protein C6orf136 homolog

      Status: VALIDATED

      Source sequence(s)
      BQ043979, BQ444983, CA459080
      Consensus CDS
      CCDS50095.1
      UniProtKB/TrEMBL
      B8JJ69, Q3TA61
      Related
      ENSMUSP00000116278.2, ENSMUST00000148721.8
      Conserved Domains (1) summary
      pfam10184
      Location:149 → 274
      DUF2358; Uncharacterized conserved protein (DUF2358)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      36203569..36208270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524877.2 → XP_006524940.1  uncharacterized protein C6orf136 homolog isoform X2

      See identical proteins and their annotated locations for XP_006524940.1

      UniProtKB/TrEMBL
      A0PJN6, B8JJ66
      Related
      ENSMUSP00000114151.2, ENSMUST00000148482.8
      Conserved Domains (1) summary
      pfam10184
      Location:66 → 191
      DUF2358; Uncharacterized conserved protein (DUF2358)

    2. XM_006524875.4 → XP_006524938.1  uncharacterized protein C6orf136 homolog isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:114 → 240
      PHA03247; large tegument protein UL36; Provisional
      pfam10184
      Location:242 → 367
      DUF2358; Uncharacterized conserved protein (DUF2358)
    Nucleotide Protein Strain
    Heading Accession and Version

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