NAC1 NAC domain containing protein 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: NAC1
Gene description: NAC domain containing protein 1
Primary source: Araport:AT1G56010
Locus tag: AT1G56010
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: anac021; ANAC022; Arabidopsis NAC domain containing protein 21; Arabidopsis NAC domain containing protein 22; F14J16.32; NAC domain containing protein 1
Summary: Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)
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Genomic context

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See NAC1 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 3

Sequence:: Chromosome: 1; NC_003070.9 (20946571..20949281, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in roots to limit root hair growth.
Title: Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in roots to limit root hair growth.
NAC1 regulates root ground tissue maturation by coordinating with the SCR/SHR-CYCD6;1 module in Arabidopsis.
Title: NAC1 regulates root ground tissue maturation by coordinating with the SCR/SHR-CYCD6;1 module in Arabidopsis.
Data indicate that the structure of NAC transcription factor AtNAC1 monomer contained four alpha-helices and eight beta-sheets.
Title: In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana.
Molecular mechanisms underlying the cold temperature regulation of flowering time of Arabidopsis are controled by NAC1.
Title: Control of flowering time and cold response by a NAC-domain protein in Arabidopsis.
up-stream regulatory fragment of NAC1 responded to plant hormones
Title: Expression of NAC1 up-stream regulatory region and its relationship to the lateral root initiation induced by gibberellins and auxins.
Our results indicate that auxin induction of miR164 provides a homeostatic mechanism to clear NAC1 mRNA to downregulate auxin signals.
Title: MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_104479.2

Supported by ESTs:

NM_179486.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity	TAS Traceable Author Statement more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within auxin-activated signaling pathway	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within lateral root development	TAS Traceable Author Statement more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: NAC domain containing protein 1

NP_175997.1

NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2928 Blast hits to 2921 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2928; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NP_849817.1

NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2736 Blast hits to 2731 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2736; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

20946571..20949281 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_104479.2 → NP_175997.1 NAC domain containing protein 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175997.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WRG2, Q84TE6, Q9SE10, Q9SGS9

UniProtKB/TrEMBL

A0A178W7B2, A0A5S9WS37, A0A7G2E176

Conserved Domains (1) summary

pfam02365
Location:20 → 145

NAM; No apical meristem (NAM) protein
NM_179486.2 → NP_849817.1 NAC domain containing protein 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_849817.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84TE6

Conserved Domains (1) summary

pfam02365
Location:53 → 78

NAM; No apical meristem (NAM) protein