U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG2162 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38360, updated on 10-May-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG2162provided by FlyBase
    Primary source
    FLYBASE:FBgn0035388
    Locus tag
    Dmel_CG2162
    See related
    AllianceGenome:FB:FBgn0035388
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:Posey170; Dmel\CG2162
    Summary
    Predicted to enable nucleic acid binding activity. Is expressed in several structures, including dorsal ectoderm anlage; embryonic/larval deutocerebrum; germ layer; local interneuron of adult antennal lobe; and presumptive embryonic/larval system. Orthologous to several human genes including R3HCC1L (R3H domain and coiled-coil containing 1 like). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG2162 in Genome Data Viewer
    Location:
    63A3-63A3; 3-5 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (3035196..3040469)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (3035196..3040469)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene always early Neighboring gene Peroxiredoxin 4 Neighboring gene scramblase 2 Neighboring gene Sphingosine kinase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Neuronal Cbl controls biosynthesis of insulin-like peptides in Drosophila melanogaster. Yu Y, et al. Mol Cell Biol, 2012 Sep. PMID 22778134, Free PMC Article
    2. Diversity and wiring variability of olfactory local interneurons in the Drosophila antennal lobe. Chou YH, et al. Nat Neurosci, 2010 Apr. PMID 20139975, Free PMC Article
    3. Diversity, variability, and suboesophageal connectivity of antennal lobe neurons in D. melanogaster larvae. Thum AS, et al. J Comp Neurol, 2011 Dec 1. PMID 21800296
    4. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. Lipatov M, et al. BMC Biol, 2005 Nov 12. PMID 16283942, Free PMC Article
    5. Time-resolved mapping of genetic interactions to model rewiring of signaling pathways. Heigwer F, et al. Elife, 2018 Dec 28. PMID 30592458, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG2162-PA
    CG2162-PE
    CG2162-PF
    NP_001163332.2
    • non-AUG (AUC) translation initiation

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      3035196..3040469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139503.3 → NP_647760.1  uncharacterized protein Dmel_CG2162, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647760.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZW2
      Related
      FBpp0072851
      Conserved Domains (1) summary
      cl17169
      Location:392 → 456
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001169861.2 → NP_001163332.2  uncharacterized protein Dmel_CG2162, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163332.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JIB4
      Conserved Domains (2) summary
      cl00297
      Location:6 → 70
      R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
      cl17169
      Location:519 → 583
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_001274420.2 → NP_001261349.2  uncharacterized protein Dmel_CG2162, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261349.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MRH9
      Conserved Domains (1) summary
      cl17169
      Location:172 → 236
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1JIB4 E1JIB4
    Q8MRH9 Q8MRH9
    Q9VZW2 Q9VZW2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools