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    AT5G57060 60S ribosomal L18a-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835810, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G57060
    Gene description
    60S ribosomal L18a-like protein
    Primary source
    Araport:AT5G57060
    Locus tag
    AT5G57060
    See related
    TAIR:AT5G57060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MHM17.20; MHM17_20
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    Genomic context

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    See AT5G57060 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (23089909..23092224)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345231.1
    NM_001345232.1
    NM_001345233.1
    NM_001345234.1
    NM_001345235.1
    NM_001345236.1
    NM_001345237.1
    NM_125088.3
    NM_203217.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    60S ribosomal L18a-like protein
    NP_001318817.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974946.1
    • BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23089909..23092224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345231.1 → NP_001318817.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q7X6A8

    2. NM_001345233.1 → NP_001330164.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q7X6A8

    3. NM_001345232.1 → NP_001330168.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q9LTR7

    4. NM_203217.2 → NP_974946.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974946.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, A0A5S9YET2, F4KAI3

    5. NM_125088.3 → NP_568847.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q7X6A8

    6. NM_001345235.1 → NP_001330169.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q7X6A8

    7. NM_001345234.1 → NP_001330167.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q9LTR7

    8. NM_001345236.1 → NP_001330165.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, A0A5S9YET2, F4KAI3

    9. NM_001345237.1 → NP_001330166.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8Q2, Q7X6A8
    Nucleotide Protein
    Heading Accession and Version

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